Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score = 80.1 bits (196), Expect = 4e-19
 Identities = 96/350 (27%), Positives = 143/350 (40%), Gaps = 38/350 (10%)

Query: 26  FATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLV 85
           F   T  QA A PL   G+ + + A TGSGKT +  L +L+ L+                
Sbjct: 20  FVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---------------- 63

Query: 86  IYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRIT---TAVRTGDTPQKERAAMRK 142
                L     +IR  +  P   ++Q   +Q     + T   + + TG    KE+AAM +
Sbjct: 64  ----DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLR 119

Query: 143 LAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALC 202
             P +L+ TP  L   + +  G   L+HV  +I+DE    A        A  +ERL   C
Sbjct: 120 KVPDVLIGTPGRLLEQLNA--GNLDLSHVQVLILDE----ADRMLDMGFAEDMERLCKEC 173

Query: 203 KKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDV 262
           +   + +  SAT        + ++G      + D  H     ++          + A   
Sbjct: 174 ENREQTLLFSATTGGA--ALRDIIGK----VLKDPEHLMLNSVSQLAEGTRQQIITADHD 227

Query: 263 WGLVYDRLATLARE-HRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKALRLDA 321
                     LA E     ++F NTR +A+RI  HL  +  K  V   HG   +  R  A
Sbjct: 228 QHKEQIAQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVL--HGEKDQKDRKLA 285

Query: 322 EQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAG 371
            +R K G  +VLVAT     G+DI  +DLV     P S   ++ RVGR G
Sbjct: 286 IERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTG 335