Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 1419 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

 Score = 1985 bits (5142), Expect = 0.0
 Identities = 1005/1428 (70%), Positives = 1165/1428 (81%), Gaps = 15/1428 (1%)

Query: 1    MNLPAKHHPVLELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSA 60
            MNLP      L  FHPAVSTWFR  F +VT AQAQAWPLI   QS L+AAPTGSGKTL+A
Sbjct: 1    MNLPESTDTALTGFHPAVSTWFRSTFPSVTGAQAQAWPLIRQRQSTLIAAPTGSGKTLTA 60

Query: 61   FLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNA 120
            FLAVLD+L+ +G+ + GELP +TLV+YVSPLKALSNDI++NLQ PL GI++ +   GL  
Sbjct: 61   FLAVLDDLVHQGLANGGELPDETLVVYVSPLKALSNDIQINLQNPLAGITEHLRNLGLPP 120

Query: 121  PRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIH 180
              I TAVRTGDTPQK+RA MRK  PHILVTTPESLYVL+GS SGR+ LA   TVI+DEIH
Sbjct: 121  LAIRTAVRTGDTPQKDRALMRKRPPHILVTTPESLYVLLGSDSGRQMLASTRTVIIDEIH 180

Query: 181  ALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHA 240
            A+A  KRG+HLAL+LERLQ LC +PL RIGLSATQ+P++ V++FLVGSGR CAIVDIGHA
Sbjct: 181  AIAAGKRGSHLALSLERLQGLCAEPLMRIGLSATQKPIDAVSRFLVGSGRACAIVDIGHA 240

Query: 241  RKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDR 300
            R RDL IEVPPVPL AVMA DVW  VYDRLA LAREHRTTL+FVNTRRLAER+ RHLS+R
Sbjct: 241  RPRDLDIEVPPVPLSAVMANDVWERVYDRLAELAREHRTTLIFVNTRRLAERLARHLSER 300

Query: 301  LGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSI 360
            LGK AVAAHHGSL+K +RLDAEQRLK G+LQVL+ATASLELGIDIGD+DLVCQ+ SPGSI
Sbjct: 301  LGKTAVAAHHGSLAKEMRLDAEQRLKGGELQVLIATASLELGIDIGDVDLVCQIGSPGSI 360

Query: 361  AAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQ 420
              FLQRVGR+ HQV G PKGRLF T+RDDLIEC ALLDCVR+GELD L IP APLDVLAQ
Sbjct: 361  NGFLQRVGRSRHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLQIPVAPLDVLAQ 420

Query: 421  QIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDA 480
            QI+AE S Q W EQ LL  + +A PYA LD+ HYQALL+ML++GYNGRQG+RSAYLHRDA
Sbjct: 421  QIIAEVSAQEWSEQALLALIHRAAPYATLDERHYQALLQMLSDGYNGRQGIRSAYLHRDA 480

Query: 481  VSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGN 540
            ++ TLRGRRG++LTA+TSGGTIPDNADY+VLLEPQ+LNIGSVNEDFAVESIAGDIFQLGN
Sbjct: 481  LTRTLRGRRGAKLTAVTSGGTIPDNADYSVLLEPQSLNIGSVNEDFAVESIAGDIFQLGN 540

Query: 541  ASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGD 600
             SYRILRVE G+VRVEDAHG PPTIPFWLGEAPGRS ELSAAVARLQ ++D  L+   GD
Sbjct: 541  TSYRILRVEAGKVRVEDAHGQPPTIPFWLGEAPGRSHELSAAVARLQGQMDALLSATPGD 600

Query: 601  TVEVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHS 660
                  WL  T  L+ A A Q+LDYLAR R  L ALPSQDTL+MERFFD SGGTQLIIH+
Sbjct: 601  LHAAQDWLTDTLGLNRASAEQILDYLARARLALSALPSQDTLIMERFFDASGGTQLIIHT 660

Query: 661  PYGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAE 720
            P+GSR+NRAWGLALRKRFCRTFN ELQAAASE+AIVLSLSTSHSFELDEVWRYLNS+SAE
Sbjct: 661  PFGSRVNRAWGLALRKRFCRTFNVELQAAASENAIVLSLSTSHSFELDEVWRYLNSQSAE 720

Query: 721  PILIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACL 780
             ILIQA+LDAPLFGVRWRWNAGVA+ALPR+ GGRKVAPQIQRMKSEDL+A+VFPDQIACL
Sbjct: 721  HILIQAVLDAPLFGVRWRWNAGVALALPRYTGGRKVAPQIQRMKSEDLIASVFPDQIACL 780

Query: 781  ENIAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASA 840
            EN+AGER++P+HPLVEQTLDDCLHEAMDSEGWLALLRRME G VRL+ RDLPAPSP+A+ 
Sbjct: 781  ENLAGEREVPEHPLVEQTLDDCLHEAMDSEGWLALLRRMEHGEVRLISRDLPAPSPMAAE 840

Query: 841  ILNARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPD 900
            IL+ARPY FLDDAPLEERRTQAVLNRRW+D  S+DDLGALDADAIA V  EAWP P  PD
Sbjct: 841  ILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLGALDADAIAGVREEAWPAPNGPD 900

Query: 901  EMHEALMSLGAIGQVEVDANPCWDLLLRQLAKAGRALRLP---DDKLWLARERLNLLLAL 957
            EMHEALMSL  I   EV   P W   L  LA++GRA +L      +LW+A ERL+ +  +
Sbjct: 901  EMHEALMSLACIADNEV--TPQWATWLHALAQSGRAYQLHTHLHTRLWVAVERLSCVQTI 958

Query: 958  YPTAHREPALERLAGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQAL 1017
            YP       +  L GFD+P   + A++E+LRARL G GP +L +IAAPL  PV D+ QAL
Sbjct: 959  YP-----GNVPLLPGFDEPWTVEEAVTEVLRARLGGFGPLSLIEIAAPLALPVADVTQAL 1013

Query: 1018 ARLEAEGYVLRGHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQ 1077
            ARLE EGYVLRGHFSPGAT  QWCERHLLARIHRYTVKRLRREIEPV+LQDFMRFLFDWQ
Sbjct: 1014 ARLEHEGYVLRGHFSPGATQEQWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQ 1073

Query: 1078 HLAPDERLRGPQAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAWS 1137
            HL+   R +G   + +++GQ +G+ +A +AW+++LL AR+KDYS  WLDE CRSG+  W+
Sbjct: 1074 HLSDGTRGQGSAMLPQIVGQFEGYAAATSAWDSDLLSARLKDYSSTWLDELCRSGKLVWT 1133

Query: 1138 RLAATVASSTLTSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALFFDE 1197
            RL+   ++  L STP+VLLPR+Q+  W  L        L  +AQ+VH+AL+  GALFFDE
Sbjct: 1134 RLSNKTSAMALRSTPVVLLPRNQVGLWSGLTEPTDATTLSPKAQKVHQALRDHGALFFDE 1193

Query: 1198 LAHEAHLLPSELETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRRGHPPLSSSMA 1257
            L HEAHLL SELETALQELVG+G+  ADSF GLR+L TPA+KR +R+SRRG       M 
Sbjct: 1194 LVHEAHLLRSELETALQELVGAGVVNADSFAGLRALTTPASKRQARSSRRGRGAFIGGMD 1253

Query: 1258 HAGRWALLRR--SDAPPDHDQRLEHIARTLLRRYGVICWRLLARESDVLPPWRELLRCYH 1315
             AGRWAL+RR  + A P   + LEH+A TLLRRYGV+ WRLL RE++ LP WRELLR +H
Sbjct: 1254 DAGRWALIRRPSTAAGPPSAETLEHVAMTLLRRYGVVFWRLLEREAEWLPSWRELLRTFH 1313

Query: 1316 RLEARGEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVVSAGDPLNLIGSLLP 1375
            RLEARGEIRGGRF++GLAGEQFALPEA+ LLR+VRRR  DG+L  V   DPLNL+G+LLP
Sbjct: 1314 RLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPHDGSLIAVCGADPLNLVGTLLP 1373

Query: 1376 GAKVPAVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQKLLR 1423
            G KVPAV GNR++YRDG+P AV +AG+   LVE    ++++ +++L+R
Sbjct: 1374 GTKVPAVSGNRIVYRDGLPAAVMVAGKQQVLVEV---DRQAVQERLIR 1418