Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 495 a.a., ATP-dependent RNA helicase RhlE from Azospirillum sp. SherDot2

 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 100/368 (27%), Positives = 157/368 (42%), Gaps = 48/368 (13%)

Query: 11  LELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLR 70
           L L  P +       ++T T  QA A PL+ AG+ +L  A TG+GKT +  L +L  L +
Sbjct: 7   LGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQRLFQ 66

Query: 71  EGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTG 130
              +   + P    V+ ++P + L+      LQ     I  +    G + P   T +  G
Sbjct: 67  NKKRVAAKSPR---VLILTPTRELA------LQ-----IGDSFTTYGRHLPIRRTVIHGG 112

Query: 131 DTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAH 190
                + +A+ +    +L+ TP  L  LM  A     L  +   ++DE    A       
Sbjct: 113 VGQSPQVSAIAR-GVEVLIATPGRLLDLM--AQNHVNLGTIEFFVLDE----ADRMLDMG 165

Query: 191 LALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLA-IEV 249
               + ++ A+  K  + +  SAT                P A+VD+ ++   D   IEV
Sbjct: 166 FIRDVRKVVAVLPKDRQTLLFSATM---------------PDAVVDLANSILTDAERIEV 210

Query: 250 PPVPLGAVMAIDVWGLVYDR------LATLAREHRT--TLVFVNTRRLAERITRHLSDRL 301
            P     V  I+   L  DR      LA L  +     T+VF  T+  A+RI  HL  + 
Sbjct: 211 TPQST-TVERINQRVLFVDRADKRRLLADLLEDSAMARTIVFARTKHGADRIADHLK-KA 268

Query: 302 GKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIA 361
           G  A A H G  S++ R+ A +  ++G+L+ LVAT     GIDI  I  V     P    
Sbjct: 269 GITADAIH-GDKSQSARVRALESFRNGELRALVATDIAARGIDIDGISHVINFDLPNEPE 327

Query: 362 AFLQRVGR 369
           +++ R+GR
Sbjct: 328 SYVHRIGR 335