Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 792 a.a., large atp-dependant helicase-related protein from Agrobacterium fabrum C58

 Score =  235 bits (600), Expect = 1e-65
 Identities = 236/828 (28%), Positives = 359/828 (43%), Gaps = 97/828 (11%)

Query: 46  MLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAP 105
           MLL APTG+GKTL  F+A L +L   G    G        +Y+SPLKAL+ DI  NL  P
Sbjct: 1   MLLIAPTGAGKTLGGFMASLTDLAERGKVPPGSGFVGVHTLYISPLKALAVDIERNLTRP 60

Query: 106 LEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGR 165
                  ++E GL    I    RTGDTPQ +R   +   P IL+TTPE + +L+ +    
Sbjct: 61  -------VSEMGLP---IVIETRTGDTPQAKRQRQKVKPPDILLTTPEQVSLLLANKEAE 110

Query: 166 EGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFL 225
                +  V++DE+H+L  +KRG  L+L L R++      +R IGLSAT      + ++L
Sbjct: 111 RFFRDLKYVVLDELHSLVTSKRGHLLSLALARVRRHAPD-VRFIGLSATVAEPMDLRRYL 169

Query: 226 VGSGR---PCAIVDIGHARKRDLAI--EVPPVPLGAVMAIDVWGLVYDRLATLAREHRTT 280
              G+   P  ++ +    K D++I      +P     A      +Y+ L    ++H+TT
Sbjct: 170 APQGQGEPPAGLITVEGGAKPDISILHTEERIPWSGHSARYAGKDLYEAL----KQHQTT 225

Query: 281 LVFVNTRRLAERITRHL----SDRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVAT 336
           LVFVNTR  AER+ + L     D L    +A HHGSL    R   E  +   +L+ +VAT
Sbjct: 226 LVFVNTRSQAERVFQELWTVNDDNL---PIALHHGSLDAGQRRRVEAAMAENKLRAVVAT 282

Query: 337 ASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVAL 396
           ++L+LGID GD+DLV  V +P   +   QR+GR+ H++D   K  L P +R +++EC A 
Sbjct: 283 STLDLGIDWGDVDLVVHVGAPKGASRLAQRIGRSNHRMDEPSKAILVPANRFEVMECRAA 342

Query: 397 LDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQA 456
           LD    G  D   I    LDVLAQ ++  A  + +   EL   +  A+PYA L +  +  
Sbjct: 343 LDANYIGAQDTPPIAEGALDVLAQHVLGMACAEPFDADELYREVTSASPYANLPRATFDR 402

Query: 457 LLRMLAE-GYNGRQGVRSAYLHRDAVSGTLRGRRGSQLTALTSG-GTIPDNADYAVLLEP 514
           ++   A  GY  R   R A + R    G  R    +         GTI + A+  V +  
Sbjct: 403 VVDFTATGGYALRTYERYARI-RQMKDGRWRVSNPAVAQQYRLNLGTIVEAAELNVRMVK 461

Query: 515 Q---------ALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVRVEDAHGLPPTI 565
           +          +++G V E F  + + GD F       R   +      V  A  + P I
Sbjct: 462 RNAKGTVGRGGMSLGKVEEYFLEQLVQGDTFLFAGKVLRFEGIRENECLVSQAFSMDPKI 521

Query: 566 PFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQATFELDEACAGQLLDY 625
           P + G     S  L+  V  + A              +   W        +A   Q+ D+
Sbjct: 522 PSYAGGKFPLSTYLADQVRSMLA--------------DPARW--------QALPDQVRDW 559

Query: 626 LARTREVLGALPSQDTLVME------RFFDESGGTQLIIHSPYGSRINRAWGLALRKRFC 679
           L   +E    +P +D L++E      RFF       ++++   G   ++  G+ L +R  
Sbjct: 560 LEIQKE-KSIIPKRDELLVETFPFRKRFF-------MVMYPFEGRLAHQTLGMLLTRRLE 611

Query: 680 RTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPIL---IQALLDAPLFGVR 736
           R     +   A++ ++ +         L      L     E +L   ++A LD      R
Sbjct: 612 RAGAKPMGFVATDYSLAIWAMEDIGMRLKSRRLSLADLLDEDMLGDDLEAWLDESFMLKR 671

Query: 737 WRWNAGVAMAL--PRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLENIAGERQIPDHPL 794
              N  V   L   R  G  K   Q+    S DL+  V                 PDH L
Sbjct: 672 TFRNCAVISGLIERRHPGKEKTGRQV--TVSADLIYDVL------------RSHEPDHIL 717

Query: 795 VEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAIL 842
           +E T  D     +D      +L+R++        R L   SPLA  ++
Sbjct: 718 LEATRRDAAAGLLDIGRLGDMLKRIKGHTTH---RALEHVSPLAVPVM 762