Pairwise Alignments

Query, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

Subject, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score =  265 bits (676), Expect = 7e-75
 Identities = 198/642 (30%), Positives = 308/642 (47%), Gaps = 123/642 (19%)

Query: 29  GTPMYEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQL 88
           G    ++NFVD ++   + ++SR TG  F+VDPRVKG +T+ +     A   YD+ LA L
Sbjct: 86  GDQPVQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAAL 145

Query: 89  RAQGYATVD-------LPNGSVKIVP--------------------DQAARLEPV----- 116
           R QG++ VD       +P    K++                     + A  L PV     
Sbjct: 146 RMQGFSVVDVGGVAQVVPEADAKLLGGPIYTAGSSGMQTRTFRLQYENAVNLIPVLRPIV 205

Query: 117 ----PVEAG------------------GQQGEGSDS---VATRVFSVRNAASEQVLGILK 151
               P+ A                    Q   G D+   + T V  V+N  +  +  ++ 
Sbjct: 206 SPNNPINAYPGNNSIVITDYAENLARVAQIINGIDTPSAIDTDVVRVQNGIAVDIAAMVS 265

Query: 152 PLIDP-------RVGVITPYPAAHQLVVTDWRSNLERIA-SLLRQLDRPQEVPGSGSTQV 203
            L++        ++ VI   P ++ +++         +A +L+ +LD  Q  P +    V
Sbjct: 266 ELLETQGADQTQKINVIGD-PRSNSIIIRSGSPERTELARNLIYKLDNAQSNPSN--MHV 322

Query: 204 IYLRHANAGEVVKVLRGL--------------------------------SQEGAVPVEG 231
           +YLR+A AG++ + LRGL                                +Q  +    G
Sbjct: 323 VYLRNAQAGKLAQSLRGLLTGESDSGVSDDARGKLSAMGGNGKNTEGTSNAQNSSGTPTG 382

Query: 232 AGEAEGKDRPVVPAAGGSG-------------IRLEYEEGTNAVVMVGPDSELAAYRAIV 278
           +G   G  +      G SG             + ++ +  TN +++  PD      R ++
Sbjct: 383 SGVQSGYGQSTGSTTGTSGTSQDQDTSFSAGGVTIQADATTNTLLISAPDPLYRNLREVI 442

Query: 279 EQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLFAD--EKFGAGIVNFGSNGVNIASIAGA 336
           + LD RRAQVV+E++I EV +  A E GVQW   +   K G G VN G +GVN    +  
Sbjct: 443 DMLDQRRAQVVIESLIVEVGEDDATEFGVQWQAGNLGGKGGFGGVNLGGSGVNSTPTSKT 502

Query: 337 AASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLLTLDNAE 396
           +     + L   L   T    GIG      +  +L  ALK K G N+LSTP LLTLDN  
Sbjct: 503 SIDVLPKGLNVGLVDGTVDIPGIGKV---LDLKVLARALKSKGGTNVLSTPNLLTLDNEA 559

Query: 397 ASILVGQEVPFVTGSVTQNNA----NPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEV 452
           ASI VGQ +PFVTGS          NP+QT++R+EVG+KL ++PQI+   +V+LDI QEV
Sbjct: 560 ASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEV 619

Query: 453 SSIADTSSAS-DVITNKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGR 511
           S++ + +S +   +TNKR I T ++++D  +++LGGL+ D  S S+  VP L DIP LG 
Sbjct: 620 STVDERASVTAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGA 679

Query: 512 LFRSDATRNTKQNLMVFIRPRILRDGPSLAGLSEDKYRTLQQ 553
           LFR++    +K NLMVF+RP I+RD  +   ++ ++Y  +++
Sbjct: 680 LFRNEKRSVSKTNLMVFLRPYIIRDSGAGRSITLNRYEFMRR 721