Pairwise Alignments

Query, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

Subject, 748 a.a., General secretion pathway protein D from Sphingobium sp. HT1-2

 Score =  256 bits (655), Expect = 2e-72
 Identities = 177/554 (31%), Positives = 287/554 (51%), Gaps = 76/554 (13%)

Query: 76  DADAIYDIFLAQLRAQGYATVDLPNGSVKIVP--DQAARLEPVPVEAGGQQGEGSDSVAT 133
           DA ++ +     +  +G  T +    S+ +    D  AR+  V            D+ +T
Sbjct: 131 DAASVLETLRPLISKEGTVTANRAGNSIVVADYADNVARIRQVIARVD------RDTSST 184

Query: 134 RVFSVRNAASEQVLGILKPLID--------PRVGVITPYPAAHQLVVTDWRSNLERIASL 185
           ++  ++NA + ++   L+ L+         P    + P  +++ + +    + + R+A++
Sbjct: 185 QMVMLKNAGAREIATSLQALVQSGGGENGAPAAASVVPIDSSNAIAIRGDVNTVTRLANM 244

Query: 186 LRQLDRPQEVPGSGSTQVIYLRHANAGEVVKVLRGLSQEGA-------VPVEGA-GEAEG 237
            R+LDR  +       +V +L HA+A +++ VL+ L  + +       VP  GA G A G
Sbjct: 245 ARELDR--QAASGTEIRVYWLEHADAEKLLPVLQQLIGQSSSSPVTSSVPAAGASGGAGG 302

Query: 238 KDRPVVPAAG----------GSGIR------LEYEEGTNAVVMVGPDSELAAYRAIVEQL 281
              P   AA           GSGI       +   EG NA+++             + Q+
Sbjct: 303 GAAPASAAAAPVAAGSSGSSGSGISTRGPAIVTRYEGANAIIVAANSDVQRMLGETIRQI 362

Query: 282 DIRRAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNIASIAGA----- 336
           D RR QV+VEAII E+SD++A++LGVQ+L      G    N+ +   ++ +IAGA     
Sbjct: 363 DTRREQVLVEAIIVEISDAAAKKLGVQFLLGSTSTGFAATNYSNASPSLITIAGAYGATK 422

Query: 337 -------------------------AASGDNEALGDLLSTTTGATAGIG-HFGGGFNFAM 370
                                     AS   +A  D L++ TG   G+G   G    F  
Sbjct: 423 LGTTKTTVVAADGTTTTTETQTNSDLASSLTQAAVDSLASATGIVGGLGTQIGKNGIFGA 482

Query: 371 LVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTG-SVTQNNANPYQTIERKEVG 429
           ++NA+K  +  NLLSTP+++TLDN +ASILVGQ+VP  TG +++QN  N ++T++R++VG
Sbjct: 483 IINAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVG 542

Query: 430 VKLRIKPQINIDNSVRLDIVQEVSSIAD--TSSASDVITNKREIKTKVMVEDNGLVILGG 487
           +KL +KPQIN   +++L + QEVSS+A   ++S+SD+I NKREI+T V V+D  ++ LGG
Sbjct: 543 IKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSSSDLIINKREIETTVTVDDGEILALGG 602

Query: 488 LISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILRDGPSLAGLSEDK 547
           L+ D    + +R+PLL DIP +G LF+S +   TK NLMVFIRP ILR       L++ +
Sbjct: 603 LLDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRTKEDAQRLTQQR 662

Query: 548 YRTLQQTTPLQLPD 561
           Y  ++     + PD
Sbjct: 663 YGYVRGMQLQRSPD 676



 Score =  105 bits (262), Expect = 7e-27
 Identities = 99/358 (27%), Positives = 157/358 (43%), Gaps = 42/358 (11%)

Query: 4   RYCMAAALSLALSMAYAQEPVFDDNGTPMYEVNFVDTELGEFIDSVSRITGTTFIVDPRV 63
           R+ +  + +LAL +A    PV    G     +N  D ++  FI   +R+TG TFI+D RV
Sbjct: 3   RHILKYSAALALVLA---APV---PGHAQQTLNVRDADIRAFIQDAARVTGRTFIIDNRV 56

Query: 64  KGKVTVRTVDLHDADAIYDIFLAQLRAQGYATVDLPNGSVKIVPDQAARLEPVPVEAGGQ 123
           +GKV+V T         ++I L+ LRA G   V  P G+ +I P   A  +P  V     
Sbjct: 57  QGKVSVVTDRPLSKSEYFEIVLSTLRANGLVAVPAPGGAYRIQPADGAAGQPSAVGRAAT 116

Query: 124 QGEGSDSVATRVFSVRNAASEQVLGILKPLIDPRVGVITPYPAAHQLVVTDWRSNLERIA 183
           +    +S  T VF +R+  +  VL  L+PLI  + G +T   A + +VV D+  N+ RI 
Sbjct: 117 R----NSFVTEVFRLRSVDAASVLETLRPLIS-KEGTVTANRAGNSIVVADYADNVARIR 171

Query: 184 SLLRQLDRPQEVPGSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPVEGAGEAEGKDRPVV 243
            ++ ++DR      + STQ++ L++A A E+   L+ L Q G     G          VV
Sbjct: 172 QVIARVDR-----DTSSTQMVMLKNAGAREIATSLQALVQSG-----GGENGAPAAASVV 221

Query: 244 PAAGGSGIRLEYEEGTNAVV---------MVGPDSELAAYRAIVEQLDIRRAQVVVEAII 294
           P    + I +  +  T   +              +E+  Y   +E  D  +   V++ +I
Sbjct: 222 PIDSSNAIAIRGDVNTVTRLANMARELDRQAASGTEIRVY--WLEHADAEKLLPVLQQLI 279

Query: 295 AEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNIASIAGA-AASGDNEALGDLLST 351
            + S S                 AG       G   AS A A  A+G + + G  +ST
Sbjct: 280 GQSSSSPV---------TSSVPAAGASGGAGGGAAPASAAAAPVAAGSSGSSGSGIST 328