Pairwise Alignments

Query, 485 a.a., membrane-bound lytic murein transglycosylase F from Pseudomonas putida KT2440

Subject, 264 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 53.9 bits (128), Expect = 6e-12
 Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 27/269 (10%)

Query: 5   TALRQRCAKWLLATGLFLLLGACVEKPSTLERVKEDGVLRV-ITRNSPATYFQDRNGE-T 62
           T   + C    L  G+     A       L+ +K+ G +RV I   +P   F D N + T
Sbjct: 5   TTFTRTCVALALVAGV-----AQAAMADQLDDIKKAGKVRVAIAMGTPLFSFADANLQPT 59

Query: 63  GFEYELVQHFADDLGVKLQIETADNLDELYDALGKPSGPVLAAAGLVSSERRKTQVRYSH 122
           G + +     A DLGVKL+I +  N   +     + +  V+A    ++ ER K  V +S 
Sbjct: 60  GSDVDTATALAKDLGVKLEIVSITNAARVPTLQAQRADLVIADLS-ITPEREKV-VDFSV 117

Query: 123 PYLEVTPQVIYRNGRPRP---TGAKGLVGKKIMVLKGSSHADQLAELKKQYPALQYEESD 179
           PY  ++  V    G P+    T    L GK+I + + + +     +  K    ++YE+ D
Sbjct: 118 PYAVISIIV----GGPKSIKVTDYADLNGKRIGLTRATVNDTLTTQQAKGAEIVRYED-D 172

Query: 180 AVEVVDLLRMVDEGQIDLTLVDSNELA--MNQVYFPNVRVAFDLGETRDQRWAVAAGEDN 237
           A  +  ++     GQIDL     + L+  + Q    N+ + F     +D    +A  ++ 
Sbjct: 173 ATLITSMV----TGQIDLFSSTPSNLSEMVKQAPAKNLELKF---AQKDFDLGIALNKEQ 225

Query: 238 SLLNE-INEYLDKAQKNGTLQRLKDRYYG 265
             L E +N ++   QKNG L  +  +Y+G
Sbjct: 226 PKLKEWVNNWVVTNQKNGKLNAIYKKYHG 254