Pairwise Alignments

Query, 485 a.a., membrane-bound lytic murein transglycosylase F from Pseudomonas putida KT2440

Subject, 258 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 60.8 bits (146), Expect = 5e-14
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 13/235 (5%)

Query: 34  LERVKEDGVLRVITRNSPATY-FQDRNGE-TGFEYELVQHFADDLGVKLQIETADNLDEL 91
           L  +K  G +R+ T    A + F D  G+ TG + EL ++ A  +GVKL+++     + +
Sbjct: 25  LADIKAKGAIRIATTIDAAPWGFTDAAGKPTGLDVELAENVAKAMGVKLELQQVTGANRI 84

Query: 92  YDALGKPSGPVLAAAGLVSSERRKTQVRYSHPYLEVTPQVIYRNGRPRPTGAKGLVGKKI 151
              L      V+AA G  SS  R  QV +S PY  V   V    G P+      L G+ +
Sbjct: 85  PYLLSNKVDVVIAALG--SSPERAKQVAFSKPYAAVYLGVYGGKGTPKFAKVSDLAGQTV 142

Query: 152 MVLKGSSHADQLAELKKQYPALQYEESDAVEVVDLLRMVDEGQIDLTLVDSNELAMNQVY 211
            V KGS+    L+EL      ++ E++ +     L      GQ    L   N     +V 
Sbjct: 143 AVPKGSTPDLSLSELAPGAKLIRLEDTASTISAFL-----SGQ--APLFAENNFIAQKVA 195

Query: 212 FPNVRVAFDLGE--TRDQRWAVAAGEDNSLLNEINEYLDKAQKNGTLQRLKDRYY 264
             N     ++         +      + +LL E+N+ +D    +G+L  L+ +++
Sbjct: 196 DENPAKGIEMKSLIRISPAYMAVQPSETALLAEMNKIIDAQAADGSLAALRLKWF 250