Pairwise Alignments

Query, 447 a.a., carbohydrate-selective porin from Pseudomonas putida KT2440

Subject, 493 a.a., Porin B from Xanthobacter sp. DMC5

 Score =  118 bits (295), Expect = 5e-31
 Identities = 111/449 (24%), Positives = 188/449 (41%), Gaps = 55/449 (12%)

Query: 25  QAAEAFSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFA 84
           +A  + + +  W+ GDWGG R +L + G    ++Y+GE+  N  GG        Y+ +F 
Sbjct: 64  EAEPSIAPQLGWL-GDWGGYRPKLAEAGIKVGVNYIGELWRNTEGGLGTG--TAYNGRFQ 120

Query: 85  LGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRLTQ 144
                DL K+  W  A F  ++ +  G   S   +     G    V  V     T RL +
Sbjct: 121 FSLDADLDKLFNWKGATFHASVLQIQGSGFSGQYL-----GNIMGVSNVDALSTT-RLFE 174

Query: 145 MWIKQKYFDGALDVKFGRFGEGEDFNSFPCDFQNLAFCGSQVGNW---------VGGIWY 195
           ++I+Q + DG   ++FG+     +   F        F  S  G W          GG  Y
Sbjct: 175 LYIEQAFGDGKSSIRFGQLSADSE---FAISDNGSLFLNSTFG-WPALFAADLPSGGPAY 230

Query: 196 NWPVSQWALRVKYNITPEFFVQVGAFEQNPS----NLETGNGFKLSGSGTKGAILPVEAV 251
             P++   +RVK+    E+ V VG F  NP+    + +  N + L+    +G  +  E  
Sbjct: 231 --PLATPGVRVKWVPNDEWTVLVGLFNGNPAPCCGDPQEENKYGLNFIVDQGVFVIGEVA 288

Query: 252 WS----PKVNGLPGEYRLGYYYSTAKADDVYDDVNGNPQALTGEAFKSH--SSKHGWWVV 305
           +S         LPG  ++G +Y++   +    D+ G P A        +     + ++ +
Sbjct: 289 YSYNKAENAAWLPGTVKVGGWYNSNSFNSQVYDIFGVPLASPASIGLPNQIQGDYAFYAI 348

Query: 306 AQQQVTAHGGDVNRGLSLFANFTVHDKATNVVDNYQQVGLVYKGAFDARPKDDIG--FGV 363
             Q +    G  ++G+S+F   T      N +  Y   G+ +KG    R  D  G  FG 
Sbjct: 349 IDQMIWRKPGTKDKGISVFGRVTAAPSEQNQLGFYWDGGITFKGLVPGREDDAFGVAFGN 408

Query: 364 ARIHVNDDVKKRAELLNAQSGINDYDNPGFVPLQRTEYNAELYYGFHVTNWLTVRPNLQY 423
           AR+    +  ++A+L  A        N  + P++ +E   E+ Y   V    T++P+ QY
Sbjct: 409 ARV---TNAAQQADLYTA------LYNGSYYPIRSSETVLEVTYSAQVMPGWTIQPDFQY 459

Query: 424 IKSPG----------GVDEVDNALVAGLK 442
           I +PG          G+  V NA V G++
Sbjct: 460 IWNPGGGVLNPNDPLGISLVKNAAVFGVR 488