Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 2e-14
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 13/146 (8%)

Query: 21  LQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEP--FVFQTARNLALDHLRARRVQA- 77
           L+  + N   A D+  +T++R+    G    + +EP  ++   AR L +D  R   ++  
Sbjct: 25  LKGKLHNACDAADVAHDTFVRILG--GRHAAQILEPRDYLATIARGLVIDRYRRHAIEQA 82

Query: 78  -RMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGAT 136
            +  + + PD       A A S ED A   + L  +  +L  L ER +RIF+LS++ G T
Sbjct: 83  YKQTLAERPD-------ATAISEEDKAIIIETLVAVDKALAGLGERARRIFMLSQVEGLT 135

Query: 137 YLEIAEQLSVSPSTVQKELKLIMAIC 162
           Y +IA++L VS +TV+K +   +  C
Sbjct: 136 YQQIADELQVSLTTVKKHMIRALTEC 161