Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  250 bits (639), Expect = 8e-72
 Identities = 132/169 (78%), Positives = 148/169 (87%)

Query: 1   MSQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQ 60
           MSQSRFN VFL QR+ LLRTLQRMV N STAEDLLQETYLRV+RAL ERPI+H+EPFV+Q
Sbjct: 1   MSQSRFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQ 60

Query: 61  TARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLS 120
           TARNLALDHLRARR+QAR L ++VP +VL SVAAP ++ EDA  AEQ+L+ LSVSL QLS
Sbjct: 61  TARNLALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLS 120

Query: 121 ERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAERL 169
            RQQRIFILSRLHG +Y EIA+QL VS STVQKELKLIMAIC+GVAERL
Sbjct: 121 ARQQRIFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAICVGVAERL 169