Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 65.1 bits (157), Expect = 6e-16
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 10  FLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIE-PFVFQTARNLALD 68
           F+  RL L++   R+ G  S AED++Q+ Y R+  A         +  ++FQ  RNLA+D
Sbjct: 18  FVDNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIVRNLAID 77

Query: 69  HLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAE-QLLKHLSVSLNQLSERQQRIF 127
           H R + ++ +       +E L+ V   A  S + +H     L++++ +L +L +R +  F
Sbjct: 78  HYRKQALELKY--SGTEEEGLNVVIHGA--SPETSHINFNTLENIADALTELPQRTRYAF 133

Query: 128 ILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVA 166
            + RLHG    +IA++L VSP+ V   ++  +  C  V+
Sbjct: 134 EMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVS 172