Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 68.6 bits (166), Expect = 5e-17
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 21  LQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRVQARML 80
           L   +GN   AED++ + Y+RV     + PIE    F+++TA NL +D  R   ++    
Sbjct: 13  LNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHRRNALRQVEP 72

Query: 81  VDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGATYLEI 140
           +D +  E   + ++P T  +      Q L+ L  +L +L    +  F+L +L G T+L+I
Sbjct: 73  LDVLDAEERFASSSPHTHHDHG----QRLELLERALAELPPACRDSFLLRKLEGLTHLQI 128

Query: 141 AEQLSVSPSTVQKELKLIMAIC 162
           AE+LS+S + V+K +   M  C
Sbjct: 129 AERLSISRAMVEKHIVNAMKHC 150