Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 8   SVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLAL 67
           S+FL         L++ +G+   A D+L ETYLRV R      +     ++++ A N+A 
Sbjct: 11  SLFLASYEDFKVRLRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNAYLYRMALNIAA 70

Query: 68  DHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIF 127
           D    R+  AR+L     +E+L S A  A         ++ ++ L  +L +L  R+++I 
Sbjct: 71  DR---RQADARLLTGSEVEELLQS-ADEAQDPSRVVGGQKEIQSLVKALYELPARRRKIL 126

Query: 128 ILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAER 168
           I +RL  A +LEI+++  +S   V+KE+K  +  C    ER
Sbjct: 127 IAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAKRLER 167