Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 17  LLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRVQ 76
           +L  L++   N S A D+ Q+ + +         +E    F+FQ ARNL  DH R ++V+
Sbjct: 21  ILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRKQKVR 80

Query: 77  ARMLVDDVPDEVLHSVAAPATSSED----AAHAEQLLKHLSVSLNQLSERQQRIFILSRL 132
             +  D    +     A PAT  ++    A    Q L+ L   L +LS R++   +L R 
Sbjct: 81  HTVHSDQADMD-----AEPATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLHRF 135

Query: 133 HGATYLEIAEQLSVSPSTVQKELKLIMAIC 162
            G +  +IAE++ +S S V+K +   +  C
Sbjct: 136 EGLSQAQIAERMGISTSMVEKHIAFALLHC 165