Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 21  LQRMVGNPSTAEDLLQETYLRV---SRALGERPIEHIEPFVFQTARNLALDHLRARRVQA 77
           L+R +G+   A D+ Q+T+LR+    R  G++       ++ Q ARNL +D  R  R++ 
Sbjct: 26  LRRRLGDREHAADVAQDTFLRLLVSGRFPGDK---ESRSYLAQIARNLVIDQWRRLRIER 82

Query: 78  RMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGATY 137
             L     + + H     + S E  A   + L  +   L+++ +  ++ F+LS+  G +Y
Sbjct: 83  AYL-----ESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFLLSQFEGLSY 137

Query: 138 LEIAEQLSVSPSTVQKELKLIMAICMGVA 166
            +IAE+L V+ S+VQK +   +  C  VA
Sbjct: 138 AQIAERLGVTVSSVQKYMTRAIVACYQVA 166