Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 58.5 bits (140), Expect = 6e-14
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 10  FLVQRLTLLRT-LQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALD 68
           FLV R   L+  L R +GN   A D LQ+T+LR+        +     ++ + A NLA D
Sbjct: 12  FLVSRYDELKQRLARRLGNSDQASDALQDTWLRLESRDDIDGVRDPASYLLRVAVNLAYD 71

Query: 69  HLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFI 128
            L     Q R+   +  D +L     PA      A     +  L+  + ++  R++++ +
Sbjct: 72  QLGK---QGRLATPEEIDALLEDAPDPAPGPSQIAEDRSEMAALAALIARMPPRRRQVLV 128

Query: 129 LSRLHGATYLEIAEQLSVSPSTVQKELK 156
           + R       E+A +L +S  TV+KELK
Sbjct: 129 MVRWEHLPQREVAARLGISLRTVEKELK 156