Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 2   SQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQT 61
           ++     VF+  R  L R  Q++V     A+++LQ+ YL+++     R +     +  Q 
Sbjct: 8   AEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKPLGYCCQV 67

Query: 62  ARNLALDHLRARRVQA--RMLVDDVPDEVLHSVAAPATSS-EDAAHAEQLLKHLSVSLNQ 118
            RN+A D+ R   V+A  R   +DV       V+ P+  + E      Q L  +   L+ 
Sbjct: 68  VRNVAFDYHRHHSVEASYRTYCEDV-----ELVSPPSNDAPERVLDGRQALAAIDRVLDA 122

Query: 119 LSERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELK 156
           L  R +  F L+RL G T  EI  +L  S + V   +K
Sbjct: 123 LPARTRTAFELNRLSGMTQREIGVRLGCSATLVNFMIK 160