Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

 Score = 69.3 bits (168), Expect = 3e-17
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 9   VFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALD 68
           ++ V R  L R L   VG+ + A+DLLQE ++R +R +   PI +   ++++ A+NL LD
Sbjct: 12  IYGVHRADLRRFLIARVGDAAEADDLLQELWVR-ARNVAAGPIGNGRAYLYKMAQNLVLD 70

Query: 69  HLRARRVQARMLVDDVPDEVLHSVAAP-------ATSSEDAAHAEQLLKHLSVSLNQLSE 121
            LR +  Q RM  +   ++      AP       + ++ED   A + ++ +  +L  L E
Sbjct: 71  RLREQ--QRRMARERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEVQRIKTALETLPE 128

Query: 122 RQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIM 159
             +R F L +L G T+ E+A QL +S S V+K + + M
Sbjct: 129 GARRAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAM 166