Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 51.6 bits (122), Expect = 7e-12
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 13/156 (8%)

Query: 7   NSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRV-SRALGERPIEHIEPFVFQTARNL 65
           +++F   R  LLR L R  G    AEDLLQ+ ++++ ++ LG  P+    P++++ A NL
Sbjct: 20  SAIFFQNRAALLRFL-RARGAGEDAEDLLQDMWMKLEAKDLG--PVADPLPYLYRMANNL 76

Query: 66  ALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVS-----LNQLS 120
            LD  R+   + R   D        +    A  ++D A  E+++ +  +      L  L 
Sbjct: 77  MLDRYRSATRRERREQDWAEG----AGGVMADPNDDLAVDERMILNQRLEQARGILADLG 132

Query: 121 ERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELK 156
            R + +F   R+ G     IAE+L VS +TV+K+L+
Sbjct: 133 PRVELVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQ 168