Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 1e-17
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 17  LLRTLQRMVGNPSTAEDLLQETYLRVSRALGER-PIEHIEPFVFQTARNLALDHLRARRV 75
           LL+ L R + +   A D+ QETYL++     +  P+ H   F+F+ A NLA+D LR    
Sbjct: 20  LLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAIDALRR--- 76

Query: 76  QARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGA 135
           + R+       +    VA PA + E A  A + L+ L  +L QL +  ++  +L+R+ G 
Sbjct: 77  EQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNRVEGL 136

Query: 136 TYLEIAEQLSVSPSTVQKELKLIMAICMG 164
           T  ++A++L VS S V K +   +  C G
Sbjct: 137 TQKQVAQRLGVSESMVAKYIGQALRHCRG 165