Pairwise Alignments

Query, 351 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 316 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  120 bits (302), Expect = 4e-32
 Identities = 93/304 (30%), Positives = 144/304 (47%), Gaps = 8/304 (2%)

Query: 50  RAMDEALDWLVRLQCADA--ADTQAFEAWLSAAPENAEAYVEAEALWNGTPLHKVATHMH 107
           RA DEA  W VRLQ A+   A+ Q F+AW +  P++   +   + LW+ T L   A    
Sbjct: 4   RARDEAAQWFVRLQDAELSIAERQRFDAWRNEHPDHQYEFDVLQGLWSATGLLPKARLQA 63

Query: 108 QQQRRSWRGRLRSHWKPLATAALLLV----GLFTVGNLPMRLQADHLTVVGERQRLQLED 163
             +    R + R+  +    A ++ V    GLF+  + P    A+  T VGE +++ L D
Sbjct: 64  LCEAPVERPKRRAVLRYAVAAGVIAVALGLGLFSGLDHPKPYSAEFSTGVGEHRQVALPD 123

Query: 164 GAKVLLNTNSAFASERQDGRQVARLLQGEAYFQVPEGAQLPLEVEAGPLRAQVRDTDFAV 223
           G+ + LN+ +  A + + GR+   L QGEA F V      P  V AG  +  V  T F V
Sbjct: 124 GSVMDLNSRTVVAVQYEKGRRGVELKQGEAMFSVEHDTSRPFVVAAGAGQVTVTGTRFDV 183

Query: 224 RYLDGEAQVRVQRGDVDLQGER-DQRIRLSAGDSISVGPQG-FGQRQRPDMHKDLAWIDG 281
           R  +G+ +V V+ G V +QG+  D  + L+AG    V  +G        +  +  AW  G
Sbjct: 184 RRDEGQTRVMVEAGTVKVQGDSPDNLVTLTAGLGTHVDNKGSVAAAYTVNTEELTAWRTG 243

Query: 282 RLVFENCPLSQVLAEVQRYYPGWIINRNAQLEHVAVTGNYRLDQPLETLRALAHITSAQL 341
           +LVF N  L +V  EV RY    +      + ++ +T  ++ +     L+AL HI    L
Sbjct: 244 KLVFNNALLGEVAREVSRYRERPLRVSTPAVGNLRLTSVFKANDTDALLKALPHILPVAL 303

Query: 342 HEYP 345
              P
Sbjct: 304 RTLP 307