Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  243 bits (620), Expect = 1e-68
 Identities = 138/333 (41%), Positives = 199/333 (59%), Gaps = 24/333 (7%)

Query: 185 DHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAP 244
           D++ G   ++G  P ++ L  +  +VA  D+ +L+ GE+GTGKELVARA H +S R  AP
Sbjct: 139 DNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAP 198

Query: 245 FLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQA 304
            +++NCAA+PESL ESELFG+  GAFTGA   G+ GL+E A+ GT+FLDEIGE+    QA
Sbjct: 199 MISVNCAAIPESLIESELFGHEKGAFTGAS-AGRAGLVEAADGGTLFLDEIGELPLEAQA 257

Query: 305 KLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPP 364
           +LLR L +G  RRVG  +  KVDVR+I+ATHRDL+ +   G FREDL+YRL+V+ L++P 
Sbjct: 258 RLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQFREDLYYRLHVIALKLPA 317

Query: 365 LRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAI 424
           LR+RG D+  +AH F+ +   +I R   +  P    A+    WPGNVR+L+N + RA  +
Sbjct: 318 LRERGADVNEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYSWPGNVRELENAVERAVIL 377

Query: 425 CEG------------NLVDIGDLDIAGTSVARG------QDGEVASLEQAVGDFERELLQ 466
            E              L D+ D D  G + ++G      +  E  SLE     F  E   
Sbjct: 378 SESPEISAELLGIDIELSDLEDDDFIGLAPSQGGSNTSHEPTEDLSLEDYFQHFVLE--- 434

Query: 467 RLYASYPSTRQLAGRLQTSHTAIAQRLRKYGIP 499
             +  + +  +LA +L  S   + +R ++ GIP
Sbjct: 435 --HQDHMTETELARKLGVSRKCLWERRQRLGIP 465