Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 520 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  377 bits (967), Expect = e-109
 Identities = 218/515 (42%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 1   MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPN---VYIDAPTLSPAVLEELHDAL 57
           MRI V   +R+GI +++L LL    +N+   E+   +   +Y+  P L     + L    
Sbjct: 1   MRIKVHCQNRIGILRDILNLLVEYGVNVAKGEVGGEHGNAIYLFCPNLVNMQFQALRPQF 60

Query: 58  FEVHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIELCG---R 114
             + GV  V  V ++P +RRH++L+ALL A+  PVL++D  G ++ AN A  +L G    
Sbjct: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMGGSIVAANRAAAQLLGVRVD 120

Query: 115 ESAGRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPITN---------AGG 165
           E  G  +     D  L + +  +   +    +++ G   L D  P+ +         AG 
Sbjct: 121 EVPGIPLSRYAEDFDLPELVRASKSRINGLRVKVKGDVFLADIAPLQSSEHDDSEAMAGA 180

Query: 166 LLTLYPPSRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGT 225
           +LTL+   R+GER+  +      GFD++   S  +  +   A R+A LDAPLL+ GETGT
Sbjct: 181 VLTLHRADRVGERIYNVRKQELRGFDSIFQSSKVMAAVVREARRMAPLDAPLLIEGETGT 240

Query: 226 GKELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELA 285
           GKEL+ARACH  S R  +P +ALNCA LPES+AE+ELFGY PGAF GA+  GK GL+EL 
Sbjct: 241 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 300

Query: 286 NQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEG 345
             GT+FLD +GEMS  LQ KLLRFL DG FRRVG D EV +DVR+I AT  DL  + A G
Sbjct: 301 AGGTLFLDGVGEMSARLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 360

Query: 346 SFREDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLAN 405
            FR+DL++RLNVL+L +PPLR+    +  L   F+ QA  QI  P  +L P+    L   
Sbjct: 361 EFRQDLYHRLNVLSLHIPPLRECLDGLAPLVDHFLDQASRQIGCPLPKLAPAAMDRLSHY 420

Query: 406 PWPGNVRQLQNVIFRAAAICEGNLVDIGDLDIAGTSVAR--GQDGEVASLEQAVGDFERE 463
            WPGNVRQL+NV+F+A ++CEG  V +  + +    V +  G       LE  VG FE+ 
Sbjct: 421 HWPGNVRQLENVLFQAVSLCEGGTVKVEHIRLPDYGVRQPLGDFSLEGGLEDIVGRFEKA 480

Query: 464 LLQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498
           +L+ LYA + S+RQL  RL  SHT IA +LR Y I
Sbjct: 481 VLEALYAEHSSSRQLGKRLGVSHTTIANKLRDYEI 515