Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  229 bits (583), Expect = 3e-64
 Identities = 129/300 (43%), Positives = 180/300 (60%), Gaps = 13/300 (4%)

Query: 207 ALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYA 266
           ALRV   + P+LV GETG GKE+ AR  H  S+RH  PF+A+NCAA+PE+L ESELFGY 
Sbjct: 329 ALRVKNRNLPVLVQGETGAGKEVFARQLHERSARHTGPFVAVNCAAIPENLIESELFGYV 388

Query: 267 PGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKV 326
            GAFTGA   G PGL+  A+ GT+FLDEIG+M   LQ +LLR +++G    +G  +   V
Sbjct: 389 AGAFTGASSKGMPGLLVQADGGTLFLDEIGDMPLALQTRLLRVMAEGEVAPLGAAKTRAV 448

Query: 327 DVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQ 386
           D+ +I A+HRDL  +V+EG FREDLF+RL      +PPLR+R   + ++     Q+A  +
Sbjct: 449 DIHVICASHRDLSVLVSEGRFREDLFFRLGCARFCLPPLRERTDKLALINRLLEQEA--R 506

Query: 387 IQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAICEGNLVDIGDL--DIAGTSVAR 444
             R +  + PS    LL   WPGNVRQL++V+  A A+CEG  V + DL  ++ G  VA 
Sbjct: 507 NSRVSVGIAPSALQLLLGYAWPGNVRQLRHVLAYACAVCEGGTVQVADLPVEVRGEQVAA 566

Query: 445 GQDGEVASLEQAVGDFERELLQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI--PGKP 502
             +   +   Q V D    L++  +   P+ + L      S   + +R+ + GI  PGKP
Sbjct: 567 PTEDRASPERQVVLD---ALIRHRWKPLPTAQALG----ISRATLYRRVNQLGIDMPGKP 619