Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  241 bits (615), Expect = 6e-68
 Identities = 151/401 (37%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 99  GLVLLANPALIELCGRESAGRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAM 158
           GL L+  P   +  GR     S+GE   D        D  FHL  R       + L+   
Sbjct: 258 GLELIGRP--FQQLGRSELSDSMGEAVRDR-------DCTFHLHNRSQL----ACLVSVC 304

Query: 159 PITNAGGLLTLYPPSRMGERLSALHHDHAE-GFDALLGESPAIRTLKARALRVAALDAPL 217
           P+   G +++L    R+ E    +    A   FD + G S AI+         +  D+  
Sbjct: 305 PLEQGGVIVSLRENRRIREITRRIIGTQASYTFDTIQGSSRAIQDALHLGRIASRSDSTT 364

Query: 218 LVHGETGTGKELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGG 277
           L+ GE+GTGKEL A+A H  S R   PF+A+NC A+P  L +SELFG+  GAFTG+ RGG
Sbjct: 365 LILGESGTGKELFAQAIHNGSDRCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGG 424

Query: 278 KPGLMELANQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRD 337
             G  ELA+ GT+FLDEIG+MS   Q  LLR L +G   RVG     +VDVRII+ATHR+
Sbjct: 425 SAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEITRVGAKNSRQVDVRIIAATHRN 484

Query: 338 LERMVAEGSFREDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPS 397
           L + VA+G+FREDL+YRLNVLNL VPPLR R +DI +LA  F+ +    +++     +P 
Sbjct: 485 LSQAVAQGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLARCARSLRKSVQGFSPE 544

Query: 398 THSALLANPWPGNVRQLQNVIFRAAAICEGNLVDIGDLDIAGTSVARGQDGEVASLEQAV 457
             + L A  WPGNVR+L+N I RA  +  G L++  DL +     A  +  E  + +   
Sbjct: 545 AMALLSAYGWPGNVRELENSIERATNLAMGALIEPVDLPLENRQRAPLRAYEPQAAQDLS 604

Query: 458 GDFERELLQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498
                 ++  L  +  + R  A +L  S   +  ++ ++G+
Sbjct: 605 SHERHAIVAALTNTGGNIRLAARQLNVSRGGLYNKMSRFGL 645