Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  231 bits (590), Expect = 3e-65
 Identities = 133/332 (40%), Positives = 196/332 (59%), Gaps = 25/332 (7%)

Query: 187 AEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAPFL 246
           A G   ++G    ++ + ++  +VA  D+ +L+ GE+GTGKELVARA H +S R  AP +
Sbjct: 146 ANGEIGIIGSCQPMQDMYSKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMI 205

Query: 247 ALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKL 306
           ++NCAA+PE+L ESELFG+  GAFTGA   G+ GL+E A+ GT+FLDEIGE+    QA+L
Sbjct: 206 SVNCAAIPETLIESELFGHEKGAFTGAS-AGRAGLVEAADGGTLFLDEIGELPLEAQARL 264

Query: 307 LRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPPLR 366
           LR L +G  RRVG  +  KVDVR+I+ATHRDL+ +   G FREDL+YRL+V+ L++P LR
Sbjct: 265 LRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKNLAKAGQFREDLYYRLHVIALKLPALR 324

Query: 367 DRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAICE 426
           +RG D+  +A+ F+ +   +I R     +     A+    WPGNVR+L+N + RA  + E
Sbjct: 325 ERGSDVNEIANVFLARQSARIGRDDLHFSAEAEQAIRHYSWPGNVRELENAVERAVILSE 384

Query: 427 ---------GNLVDIGDLD----------IAGTSVARGQDGEVASLEQAVGDFERELLQR 467
                    G  +++ DLD          +A    A  +  E  SLE     F  E    
Sbjct: 385 SAEISAELLGIDIELSDLDEDDILDNALVVANAGNASHEPTEDLSLEDYFQHFVLE---- 440

Query: 468 LYASYPSTRQLAGRLQTSHTAIAQRLRKYGIP 499
            +  + +  +LA +L  S   + +R ++ GIP
Sbjct: 441 -HQDHMTETELARKLGVSRKCLWERRQRLGIP 471