Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  231 bits (588), Expect = 6e-65
 Identities = 154/392 (39%), Positives = 214/392 (54%), Gaps = 38/392 (9%)

Query: 131 LQALLDNNFHLPMREMQLNGHSLLLDAMPITNAGGLLTLYPPSRMGERLSALHHDHAE-- 188
           +QA+ +  FH   + + L    L LD    T            RM   LS      A+  
Sbjct: 90  VQAMKEGAFHYLTKPVVLAELKLTLDKALATE-----------RMERTLSFYQEREAQKS 138

Query: 189 GFDALLGESPAIRTLKARALRVAALDA----------PLLVHGETGTGKELVARACHAVS 238
           G  AL+GESP + TLK    +V  LDA          P+L+ GETGTGKELVARA H   
Sbjct: 139 GLQALIGESPVMLTLKHTLRQV--LDAERRMASDDLPPVLIEGETGTGKELVARALHFDG 196

Query: 239 SRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEM 298
           SR   PF+  NCA++P +L E+ELFG+  GAFT A+   + GL+E A+ GT+FLDEIGEM
Sbjct: 197 SRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKER-RVGLVEAADGGTLFLDEIGEM 255

Query: 299 SPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVL 358
              LQAKLL+ L D S RR+G  +E KVD+R+ISAT+ +LE+MV +G FR DLF+RL ++
Sbjct: 256 DLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKFRRDLFFRLRII 315

Query: 359 NLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVI 418
            L+VP L  RGQDIL+LA  F+     +  +P  R +    S LL   WPGNVR+L+N++
Sbjct: 316 ALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSWPGNVRELRNML 375

Query: 419 FRAAAICEGNLVDIGDLDIAGTSVAR--GQDGEVASLEQ---------AVGDFERELL-Q 466
            +   +    +V    L++  T V     Q    A  E          ++ D ER+L+ +
Sbjct: 376 EQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPEPGTSLPDMERDLVCK 435

Query: 467 RLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498
            L  +  +  + A  L  S   +  R+ K G+
Sbjct: 436 TLDRTDWNVTKSARMLGLSRDMLRYRIEKLGL 467