Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score =  242 bits (617), Expect = 3e-68
 Identities = 155/381 (40%), Positives = 218/381 (57%), Gaps = 20/381 (5%)

Query: 56  ALFEVHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIELCG-- 113
           AL E  G+     V+I   +RRHL  +A+L  +   V AVD+ G+V   NPAL +L    
Sbjct: 186 ALEEALGILDTQRVEI--AKRRHL--NAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLP 241

Query: 114 -RESAGRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPITNAG---GLLT- 168
              + GR + +L  +  L QAL +       R M+L  H+++ + +PI   G   GL+  
Sbjct: 242 VSAALGRPLQQLCPELDLQQALQEGTGE-ENRVMRLGSHAVVSNLLPILENGERTGLVLT 300

Query: 169 ---LYPPSRMGERLSALHHDHA----EGFDALLGESPAIRTLKARALRVAALDAPLLVHG 221
              +    R  +R+ +     A       D L G S A R +   A R A   + +L+ G
Sbjct: 301 CQDITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITG 360

Query: 222 ETGTGKELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGL 281
           E+GTGKEL+A+  H  S R   PF+A+NCAA PESL ESELFGY  GAF+G+++GGKPGL
Sbjct: 361 ESGTGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL 420

Query: 282 MELANQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERM 341
            E A++GT+FLDEIG+M   LQ +LLR L +    R+G    + +DVRII+ATH+DL   
Sbjct: 421 FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSA 480

Query: 342 VAEGSFREDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSA 401
           + +G FR DL++RLN+L L+  PLR+R +DI ++     Q+   Q Q P     P+    
Sbjct: 481 MDDGDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLP 540

Query: 402 LLAN-PWPGNVRQLQNVIFRA 421
            L    WPGNVR+L+NVI RA
Sbjct: 541 YLERYAWPGNVRELENVIERA 561