Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 524 a.a., nif-specific transcriptional activator NifA from Dickeya dianthicola ME23

 Score =  232 bits (591), Expect = 3e-65
 Identities = 128/260 (49%), Positives = 170/260 (65%), Gaps = 2/260 (0%)

Query: 172 PSRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVA 231
           PS +  R ++       GFD+++G S A+R       +V+  D  +LV GE+GTGKELVA
Sbjct: 188 PSSVVSRPASCKAPRPFGFDSMVGTSAAMRQTLEIVRQVSRWDTTVLVRGESGTGKELVA 247

Query: 232 RACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVF 291
            A H  S R AAPF+  NCAALP++L ESELFG+  GAFTGA R  K G  ELA+ GT+F
Sbjct: 248 NAIHHNSPRAAAPFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRK-GRFELADGGTLF 306

Query: 292 LDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDL 351
           LDEIGE S   QAKLLR L +G   RVGGD  ++V+VRII+AT+R LE  V  G FREDL
Sbjct: 307 LDEIGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRAGHFREDL 366

Query: 352 FYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNV 411
           +YRLNV+ + +PPLR+R +DI+ LA F +++     Q    R++      L+   WPGNV
Sbjct: 367 YYRLNVMPVSLPPLRERQEDIVELAQFLVKKIAAH-QGRTLRISDGAIRLLMGYNWPGNV 425

Query: 412 RQLQNVIFRAAAICEGNLVD 431
           R+L+N + RAA + +  L+D
Sbjct: 426 RELENCLERAAVMTDTGLID 445