Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 521 a.a., transcriptional regulator TyrR from Dickeya dianthicola ME23

 Score =  367 bits (942), Expect = e-106
 Identities = 217/518 (41%), Positives = 308/518 (59%), Gaps = 21/518 (4%)

Query: 1   MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPN-VYIDAPTLSPAVLEELHDALFE 59
           MR+ V   DR+G+T+E+L LL  R+++L  +E+ P   +Y++  TL      EL   +  
Sbjct: 1   MRLEVFCEDRIGLTRELLDLLVLRHIDLRGIEIDPTGRIYLNFTTLGFDAFRELMTEIRR 60

Query: 60  VHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPA---LIELCGRES 116
           + GV  V  V  +P +R H  L+ALL +M +PVL+ D  G V L N A   L  L   ++
Sbjct: 61  IPGVSDVRTVAFMPSEREHRALNALLESMPEPVLSFDLKGKVELVNAAALNLFALTQEKA 120

Query: 117 AGRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPI---------TNAGGLL 167
              +VG+L  D    +   +      M  + + G   L +  P+         T AG L+
Sbjct: 121 RALNVGQLLNDYPFSR-WQEQGGQPEMARVVIRGQDFLQEVTPVHLDDDKGKSTVAGALV 179

Query: 168 TLYPPSRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGK 227
           TL   +RMG +L     +    FD ++  SP +R +  +A ++A LDAPLL+ GETGTGK
Sbjct: 180 TLKSAARMGRQLQDTPVNDEREFDHIVAVSPRMRQVVEQARKLAMLDAPLLLAGETGTGK 239

Query: 228 ELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQ 287
           +++ARACH  SSR   PFLALNCAALP+ + ESEL+G+APGA+  A  G K G  E AN 
Sbjct: 240 DMLARACHLRSSRGKKPFLALNCAALPDDVMESELYGHAPGAYPNALEG-KKGFFEQANG 298

Query: 288 GTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSF 347
           G+V LDE+G+MSP +Q KLLRFL+DG+FRRVG + E+ VDVR+  AT +++  +V  G F
Sbjct: 299 GSVLLDEVGDMSPQMQTKLLRFLNDGTFRRVGEEHEIHVDVRVFCATQKNMLELVQRGLF 358

Query: 348 REDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQ--IQRPACRLTPSTHSALLAN 405
           REDL+YRLNVL L++PPLR+   D++ L   F+ +   +  I RP   +     + L   
Sbjct: 359 REDLYYRLNVLALQLPPLRECPADVMPLVELFVARFADEQGIARP--YIAQEVRNLLPQY 416

Query: 406 PWPGNVRQLQNVIFRAAAICEGNLVDIGDLDIAG--TSVARGQDGEVASLEQAVGDFERE 463
            WPGNVRQL+N I+RA A  EG+ + + D+D+      +    D    SL+     FER 
Sbjct: 417 GWPGNVRQLKNTIYRALAQMEGDELRLRDIDLPAFQPEIVHNDDLLEGSLDDISKRFERS 476

Query: 464 LLQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGIPGK 501
           +L RLY +YPSTR+LA RL  SHTAIA +LR+YG+  +
Sbjct: 477 VLTRLYQTYPSTRKLAKRLGVSHTAIANKLREYGLSSR 514