Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 195 a.a., RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 98.6 bits (244), Expect = 6e-26
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ AY+  L      +RA  R R    P  ++D+VQ+ L+ VH  RHTY P +   AW+
Sbjct: 28  GDRRAYEKLLADSVALIRAVAR-RQGVAPDSLDDVVQETLITVHRVRHTYDPARSYDAWL 86

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQL-------FAVSEVESAEASRDLTKLLKQL 123
            AIA  +  D LR   RRD+R   L DD  L        A +  ES++ ++ L + + +L
Sbjct: 87  SAIATRRAIDALRRRGRRDSRE--LHDDYALDRCPDGDDASAAAESSQRAQRLHEAIAEL 144

Query: 124 PERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           P  QR  +  + L   S+ E A+LTG ++ A+KV +HR LKAL     G
Sbjct: 145 PPGQREAVEQLGLRERSLSEAAELTGRNAGALKVNLHRALKALRERFHG 193