Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 204 a.a., RNA polymerase sigma factor RpoE from Rhodanobacter sp000427505 FW510-R12

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 2   KALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQ 61
           +AL+ +   GD+ A+ D L     H    L SR  R  AE ED+ Q+  +    A  +++
Sbjct: 15  RALVERVQQGDRRAF-DLLVRKYQHKVIGLVSRYVRTHAECEDIAQESFIRAWRAIGSFR 73

Query: 62  PQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSE--VESAEASRDLTK- 118
                  W+  IA     +HL ++ RR    D+  D+A+  A +E   +SA   R+L + 
Sbjct: 74  GDSAFYTWLYKIAVNTAKNHLVAMGRRPPSGDIDADEAEFMAGAERMHDSATPERELMRQ 133

Query: 119 --------LLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
                    ++ LPE  R  I   +++GLS +E A+  G     V+  I R  +A+
Sbjct: 134 EIEQSVFSTVQSLPEELRTAITLREVDGLSYDEIAEAMGCPIGTVRSRIFRAREAI 189