Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 200 a.a., sigma-70 family RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ 63
           LL     GD  A +  L      +R   +S+ +    + +D VQ+ LL ++    T +  
Sbjct: 38  LLESARQGDLAAVERLLTACRPDLRRIAQSQCASS-VDPDDAVQESLLLIYRRLGTLRTI 96

Query: 64  QPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQL 123
               AW  +I R++    LR++  + A   + + D  +F    VE  +   DL   ++ L
Sbjct: 97  ASFPAWAFSIVRHECHRLLRAMRGQVA---LPEPDHAIFVY--VERPDLRSDLAAAIQSL 151

Query: 124 PERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRG 162
           PE+ R  I+    E  S+ E A    L+  AVK  IHRG
Sbjct: 152 PEKYREAIILRDFEEYSISEIAGQLMLTREAVKSRIHRG 190