Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 181 a.a., ECF RNA polymerase sigma factor SigF from Xanthobacter sp. DMC5

 Score =  102 bits (254), Expect = 4e-27
 Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRR---PAEIEDMVQDVLLAVHNARHTY 60
           L+   L GD  AY+  L  LA  +R  ++ RL R     AE ED+VQ+ LLAVH  RHT+
Sbjct: 11  LMRSALAGDGAAYEQLLRDLAPALRTVVQRRLVRLGAPTAETEDVVQETLLAVHLKRHTW 70

Query: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDV-LDDDAQLFAVSEVESAEASRDLTKL 119
           + + PL  W+  IAR K+ DHLR   RR  R +V ++D A+     E      + ++ + 
Sbjct: 71  RTEDPLGPWLWTIARNKMVDHLR---RRGRRVEVPVEDFAEFLPAPEERPDTGAMEVEQH 127

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALS 167
           L  LP++Q+  +  V +EG SV ETA+   ++  AV+V +HR   +LS
Sbjct: 128 LALLPQKQQAVLRSVAVEGASVAETAERMRMTPGAVRVALHRAFASLS 175