Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 197 a.a., ECF RNA polymerase sigma factor EcfG from Xanthobacter sp. DMC5

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           VRAF RS L+R   E +D+VQ+ LL   +    + P   L AW+  I R      +R   
Sbjct: 30  VRAFARS-LTRNRTEADDLVQETLLKALSNMDKFDPGTNLRAWLFTILRNTYYTEIRKRR 88

Query: 87  RRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQ 146
           R +     L         S+  SA  +  L   L  LP+ QR  +V V   GLS EE A+
Sbjct: 89  RENDGMAALAQQDSNIGPSQEWSATLT-SLKDALALLPDDQREALVLVGAAGLSYEEAAE 147

Query: 147 LTGLSSSAVKVGIHRGLKALSRLIG 171
           + G +   +K  ++R    L  L+G
Sbjct: 148 VCGCALGTIKSRVNRARAKLLVLMG 172