Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 11/168 (6%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ A++      A+   AF R R      + ED+ Q+ LL V  A   ++P      W 
Sbjct: 16  GDEAAFRVLCQRYAVRAVAFAR-RFVGSGTDAEDVAQEALLRVWRAAPRWRPDAAFGTWF 74

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDD-----DAQLFAVSEVESAEASRDLTKLLKQLPE 125
                Y++  +L   +RR      LD      D    A++ +E  E  R L   +  LPE
Sbjct: 75  -----YRIVINLCLNARRRLPFLGLDAAGERADPAPDALAGLERQEEDRALLDAVAALPE 129

Query: 126 RQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
           RQR+ I+    EG S    A++ G S S V+  + R  ++L   +G A
Sbjct: 130 RQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRSLRLSLGAA 177