Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 183 a.a., ECF RNA polymerase sigma factor SigF from Xanthobacter sp. DMC5

 Score =  140 bits (354), Expect = 1e-38
 Identities = 76/176 (43%), Positives = 111/176 (63%), Gaps = 4/176 (2%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPA---EIEDMVQDVLLAVHNAR 57
           ++AL+    +GD  A++  L  L++ +R++ R+RL R  A   + ED+VQD LL +H  R
Sbjct: 7   LEALMRASQSGDAEAHRALLQHLSVRLRSYFRNRLRRSGAGADDAEDLVQDTLLVLHTKR 66

Query: 58  HTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLT 117
           HTY    P+ AW   IARYKL DHLR ++ R  R+  +DD   L  V   E+ + SR+L 
Sbjct: 67  HTYDGSSPVLAWTYGIARYKLIDHLR-LNARSLRNVQIDDMDDLADVDRYEAVDTSRELH 125

Query: 118 KLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
           + L+ LP   RLPI +VK+EGLS+ E A   G++ +AVK+GIHRG+K L+ L+  A
Sbjct: 126 RALETLPRHFRLPIEYVKIEGLSIAEAAARIGMTDAAVKIGIHRGMKKLAALLSEA 181