Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 20  LGTLALHVRAFLRSRLSRRPAEIE---DMVQDVLLAVHNARHTYQPQQPLTAWVQAIARY 76
           +G L     A+LR  LSRR    E   D+ Q+  + + NAR     QQP  A++ +IAR 
Sbjct: 12  IGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQP-RAYLSSIARS 70

Query: 77  KLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEAS-------RDLTKLLKQLPERQRL 129
            + D  R   RR+     L+  A  F   EV S E           + +LL QL  R R 
Sbjct: 71  LMIDQYR---RRELERAYLESLAH-FPQVEVPSEETRLLILDSLERIDRLLDQLKPRVRE 126

Query: 130 PIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRL 169
             +  +L+GL+  + A   G+S + V+  + + L A  RL
Sbjct: 127 AFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRL 166