Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 52.4 bits (124), Expect = 5e-12
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 9/176 (5%)

Query: 2   KALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQ 61
           +ALL +  TGD  A++         +  FL S LS +    E++ Q+  L++  +    Q
Sbjct: 11  EALLARYRTGDSAAFEALYARHRQGLYRFLVS-LSNKAELAEEIYQETWLSLIRSATQPQ 69

Query: 62  PQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFA---VSEVESAEASRDLTK 118
            +     W+  IAR +L DH R     +  HD  D+     A       +    SRD  +
Sbjct: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQAR 129

Query: 119 L---LKQLPERQRLPIVHVKLEG-LSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           L   L+ LPE QR  +  ++L G L V + A LTG     VK  +    + L RL+
Sbjct: 130 LDAALQGLPEDQR-EVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184