Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 199 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 35  LSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDV 94
           L+R     +D+VQ+ LL     R +++P   L AW   I R      L  V RR A +  
Sbjct: 11  LARNSDTAQDLVQETLLKAWRHRASFEPGTNLKAWTFRILRNSF---LSQVRRRGAGY-- 65

Query: 95  LDDDAQLFAV---SEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLS 151
             + A+L  +   S  ES     D+ +L  +L   Q+  I  + ++GLS EETA +  + 
Sbjct: 66  ASETAELIDIPVASNQESVVTLSDVRRLWSRLTPEQQRCIQLIGIQGLSYEETATIEQVP 125

Query: 152 SSAVKVGIHRGLKALSRLIGGAN 174
              +K  + RG + L  L+   N
Sbjct: 126 VGTIKSRVLRGRQLLRELLDQTN 148