Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 20  LGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLA 79
           L  +   +RAF RS    R    +D+VQ+ +L    AR  Y       AW   I R    
Sbjct: 23  LAAVLPQLRAFARSLAGNRDTA-DDLVQETMLKAWRARERYVAGTNFRAWAFVILRNHFL 81

Query: 80  DHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGL 139
             +R   R     D L  D  L A ++ E +   RD+ + L QLP  QR  ++ V   G+
Sbjct: 82  SEMRR-RRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGAGGI 140

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGAN 174
           S EETA++ G++   +K  + R   AL  L+ G +
Sbjct: 141 SYEETAEIIGVAVGTIKSRVARARVALEALLNGGS 175