Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 20  LGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLA 79
           L  +   +RAF RS    R    +D+VQ+ +L    AR  Y       AW   I R    
Sbjct: 23  LAAVLPQLRAFARSLAGNRDTA-DDLVQETMLKAWRARERYVAGTNFRAWAFVILRNHFL 81

Query: 80  DHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGL 139
             +R   R     D L  D  L A ++ E +   RD+ + L QLP  QR  ++ V   G+
Sbjct: 82  SEMRR-KRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGAGGI 140

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGAN 174
           S EETA++ G++   +K  + R   AL +L+ G N
Sbjct: 141 SYEETAEIVGVAVGTIKSRVARARVALEQLLDGGN 175