Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 249 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 62.0 bits (149), Expect = 8e-15
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 20  LGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLA 79
           L  +  H+RAF RS LS      +D+VQ+ LL    AR  +Q    + AW   I R    
Sbjct: 42  LAAVIPHLRAFGRS-LSGNRDTADDLVQETLLKAWAARARFQAGTNMRAWTFIILRNHYL 100

Query: 80  DHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGL 139
             +R  SR     D L  D  L A +  +      D+ + L QLP+ QR  ++ V   G 
Sbjct: 101 SQMRR-SRFRGDWDDLTADRLLAAPAGQDKHVELSDMQRALLQLPQPQREALILVGAGGF 159

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           + EE A++ G++   +K  + RG  AL +++
Sbjct: 160 AYEEAAEICGVAVGTIKSRVARGRAALEQIL 190