Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 173 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 49.3 bits (116), Expect = 4e-11
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 34  RLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHD 93
           RL+   ++ ED+VQD L+  +    +YQ  +PL  W+ +I    L +   S +RR A  +
Sbjct: 21  RLTGNESDAEDLVQDALVRAYANADSYQRGRPLRVWLFSI----LHNVFVSGTRRAAVRE 76

Query: 94  VLDDDAQLFAVSEVESAEASRDLTKL------LKQLPERQRLPIVHVKLEGLSVEETAQL 147
               DA   A +E  +A A   + +L      L  LPE Q+  +  V +EGLS ++ A  
Sbjct: 77  RFRADA--VAQAEPVAAPAQEQMVRLHQIEAALTALPEEQQTVLHLVAVEGLSYQDAADA 134

Query: 148 TGLSSSAVKVGIHRGLKALSRLIGGAN 174
            G+    +   + R    L  L  GA+
Sbjct: 135 IGIPIGTLISRLSRARAKLRALEEGAS 161