Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 162 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score = 51.2 bits (121), Expect = 9e-12
 Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 17  QDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARY 76
           +D L  L   +R F  S LS   A+ +D+ Q  L     AR  +QP   L +W+  I R 
Sbjct: 5   RDLLAILP-RLRRFAAS-LSHDRADGDDLCQAALEKGLRARDQWQPGTRLDSWMYRIMRN 62

Query: 77  KLADHLRSVSR--RDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHV 134
              D  R+  R  R    +    D        VE A    D+ + ++ LP  QR  I  V
Sbjct: 63  LWIDEGRARQRAARTFAPEEAGADVGYAGDKAVEQAMTLSDVDRAMQALPPEQREAIALV 122

Query: 135 KLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
            +EGLS +E A +  +    +   + RG  AL  L+G A
Sbjct: 123 LVEGLSYKEAAAILNIPMGTLTSRLVRGRGALIELLGEA 161