Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 182 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 5   LLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQ 64
           LL    GD+ A Q         +    R R++R  A  ED+V D ++ +     +Y P +
Sbjct: 14  LLACAQGDRRALQALYDHEGARLLGVAR-RIARDDATAEDIVHDAIIRIWTRAASYDPAR 72

Query: 65  -PLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLF--AVSEVESAEASRDLTKLLK 121
                W+ +I R+   + +R   R     D   + A      V +++    S  + + L+
Sbjct: 73  GSARGWIYSITRHLALNSIRDTRRETVLTDADTETASTLHGRVDDLDLWSGSAKIYRCLE 132

Query: 122 QLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
           QL    +  I+H  ++G S  E A L G     VK  I R LKAL
Sbjct: 133 QLQPAPQRCILHAYVDGCSHAEIAGLLGAPLGTVKAWIKRSLKAL 177