Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 205 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +R F+  R+  + AE +D++Q + L V+      Q  + + AW+  + R  + D  R  S
Sbjct: 31  LRGFVEKRVPDK-AEADDILQQLYLKVYANCEQLQEVKNIKAWLYQVTRNAVYDFFRESS 89

Query: 87  RRDARHDVLDDDAQL--FAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEET 144
           RR +  ++   D +L   A  EVE+      +   +K LP      +   +LEG+S +E 
Sbjct: 90  RRQSIGELELPDGELPGSARHEVEAL-----VEPFIKLLPAEYAEALRLSELEGISQKEI 144

Query: 145 AQLTGLSSSAVKVGIHRGLKALSRL 169
           A   G+S S  K  + RG + L  L
Sbjct: 145 AGRLGISYSGAKSRVQRGRERLKAL 169