Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 179 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 47.4 bits (111), Expect = 1e-10
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 41  EIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRD--ARHDVLDDD 98
           + +D+ Q+V L V      ++    L  W+  IA  +    L S  RR     +DV  + 
Sbjct: 44  DADDLTQEVFLKVWKNLDNFRQDAQLYTWIYRIATNECLSFLSSKKRRFFLPLNDVTAEL 103

Query: 99  AQLFAVS-EVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKV 157
            +  A S ++   E  + L K + +LP++QRL       + +  EE +Q+ G S  A+K 
Sbjct: 104 MEKVASSPDLAGDEVQQKLQKAILRLPDKQRLVFNMKYFDEMKYEEMSQILGTSVGALKA 163

Query: 158 GIHRGLKALSRLI 170
             H  +K +   +
Sbjct: 164 SYHIAVKKVEEFL 176