Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 177 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +R + R+ L+  P   +D+VQD L         +     L AW+  +     A  LR   
Sbjct: 13  LRRYARA-LTGDPWAADDLVQDTLERACAKWRLWTVGTDLRAWLFTLMHNLHASGLRQAQ 71

Query: 87  RRDARHDVLD-DDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETA 145
           RR+ R   +D DD     V+   + + + DL + L +LPE QR+ ++ V LE +S E+ A
Sbjct: 72  RREGRGLAVDPDDVAAELVAPDTAQDLALDLQRCLLRLPEEQRVVLLLVSLEDMSYEQVA 131

Query: 146 QLTGLSSSAVKVGIHRGLKALSRLIGGA 173
           ++TG     V   + R    L  L+  A
Sbjct: 132 RITGSPIGTVMSRLSRARTRLQALLNAA 159